Selected Projects
Research, tools, and publications in synthetic biology, genetic design automation, and AI-driven sequence design.
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A Framework for a Standard-Enabled FAIR Data Management Workflow for Synthetic Biology Journal Article · ACS Synthetic Biology · 2026 -
A Decade of SBOL Visual: Growing Adoption of a Diagram Standard for Engineering Biology Journal Article · ACS Synthetic Biology · 2025 -
TEDxCU: How AI is Engineering Life Itself, One Nucleotide at a Time Talk · TEDxCU · 2025 -
Standardized Golden Gate Assembly Metadata Representation Using SBOL Book Chapter · Golden Gate Cloning · 2024 -
Flapjack: Data Management and Analysis for Genetic Circuit Characterization Book Chapter · Software · Synthetic Biology, 2nd Ed. · 2024 -
Genetic Network Design Automation with LOICA Book Chapter · Software · Synthetic Biology, 2nd Ed. · 2024 -
Leveraging interactions in microfluidic droplets for enhanced biotechnology screens Review Article · Current Opinion in Biotechnology · 2023 -
Experimental Data Connector (XDC): Integrating the Capture of Experimental Data and Metadata Using Standard Formats and Digital Repositories Journal Article · Software · ACS Synthetic Biology · 2023 -
Accurate characterization of dynamic microbial gene expression and growth rate profiles Journal Article · Synthetic Biology · 2022 -
LOICA: Integrating Models with Data for Genetic Network Design Automation Journal Article · Software · ACS Synthetic Biology · 2022 -
Flapjack: Data Management and Analysis for Genetic Circuit Characterization Journal Article · Software · ACS Synthetic Biology · 2021